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65 profile(s) found

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ID Name Species Class Family Logo
MA0868.3 SOX8 Homo sapiens
 High-mobility group (HMG) domain factors SOX-related factors
MA0869.1 Sox11 Mus musculus
 High-mobility group (HMG) domain factors SOX-related factors
MA0869.2 Sox11 Mus musculus
 High-mobility group (HMG) domain factors SOX-related factors
MA0869.3 Sox11 Mus musculus
 High-mobility group (HMG) domain factors SOX-related factors
MA0870.1 Sox1 Mus musculus
 High-mobility group (HMG) domain factors SOX-related factors
MA1120.1 SOX13 Homo sapiens
 High-mobility group (HMG) domain factors SOX-related factors
MA1120.2 SOX13 Homo sapiens
 High-mobility group (HMG) domain factors SOX-related factors
MA1152.1 SOX15 Homo sapiens
 High-mobility group (HMG) domain factors SOX-related factors
MA1152.2 SOX15 Homo sapiens
 High-mobility group (HMG) domain factors SOX-related factors
MA1561.1 SOX12 Homo sapiens
 High-mobility group (HMG) domain factors SOX-related factors
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


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Download the PFMs of the model(s) selected in four different formats.