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48 profile(s) found

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ID Name Species Class Family Logo
MA1112.1 NR4A1 Homo sapiens
 Nuclear receptors with C4 zinc fingers NGFI-B-related receptors (NR4)
MA1112.2 NR4A1 Homo sapiens
 Nuclear receptors with C4 zinc fingers NGFI-B-related receptors (NR4)
MA1112.3 NR4A1 Homo sapiens
 Nuclear receptors with C4 zinc fingers NGFI-B-related receptors (NR4)
MA1170.1 MYB118 Arabidopsis thaliana
 Tryptophan cluster factors MYB
MA1170.2 MYB118 Arabidopsis thaliana
 Tryptophan cluster factors MYB
MA1511.1 KLF10 Homo sapiens
 C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA1511.2 KLF10 Homo sapiens
 C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA1512.1 KLF11 Homo sapiens
 C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA1512.2 KLF11 Homo sapiens
 C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA1627.1 Wt1 Mus musculus
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


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Download the PFMs of the model(s) selected in four different formats.