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44 profile(s) found

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ID Name Species Class Family Logo
MA1959.2 KLF7 Homo sapiens
 C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA2136.1 klf-3 Caenorhabditis elegans
 C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA2253.1 luna Drosophila melanogaster
 C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA2681.1 KLF8 Homo sapiens
 C2H2 zinc finger factors Three-zinc finger Kruppel-related
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.