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48 profile(s) found

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ID Name Species Class Family Logo
MA1627.2 Wt1 Mus musculus
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1756.1 GRF9 Arabidopsis thaliana
 C3H zinc finger factors GRF
MA1756.2 GRF9 Arabidopsis thaliana
 C3H zinc finger factors GRF
MA1787.1 NAC047 Arabidopsis thaliana
 GCM domain factors NAC
MA1787.2 NAC047 Arabidopsis thaliana
 GCM domain factors NAC
MA2016.1 GRF6 Arabidopsis thaliana
 C3H zinc finger factors GRF
MA2016.2 GRF6 Arabidopsis thaliana
 C3H zinc finger factors GRF
MA2132.1 egrh-1 Caenorhabditis elegans
 C2H2 zinc finger factors Three-zinc finger Kruppel-related
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


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Download the PFMs of the model(s) selected in four different formats.