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183 profile(s) found

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ID Name Species Class Family Logo
MA0611.1 Dux Mus musculus
 Homeo domain factors Paired-related HD factors
MA0611.2 Dux Mus musculus
 Homeo domain factors Paired-related HD factors
MA0611.3 Dux Mus musculus
 Homeo domain factors Paired-related HD factors
MA0621.1 mix-a Xenopus laevis
 Homeo domain factors Paired-related HD factors
MA0621.2 mix-a Xenopus laevis
 Homeo domain factors Paired-related HD factors
MA0629.1 Rhox11 Mus musculus
 Homeo domain factors Paired-related HD factors
MA0629.2 Rhox11 Mus musculus
 Homeo domain factors Paired-related HD factors
MA0630.1 SHOX Homo sapiens
 Homeo domain factors Paired-related HD factors
MA0630.2 SHOX Homo sapiens
 Homeo domain factors Paired-related HD factors
MA0634.1 ALX3 Homo sapiens
 Homeo domain factors Paired-related HD factors
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


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Download the PFMs of the model(s) selected in four different formats.