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70 profile(s) found

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ID Name Species Class Family Logo
MA2654.1 GLYMA-05G127600 Glycine max
 GCM domain factors WRKY
MA2655.1 GLYMA-08G218600 Glycine max
 GCM domain factors WRKY
MA2656.1 GLYMA-14G006800 Glycine max
 GCM domain factors WRKY
MA2657.1 GLYMA-14G028900 Glycine max
 GCM domain factors WRKY
MA2658.1 GLYMA-19G094100 Glycine max
 GCM domain factors WRKY
MA2659.1 GLYMA-08G281200 Glycine max
 Homeo domain factors PLINC
MA2660.1 GLYMA-12G168700 Glycine max
 Homeo domain factors PLINC
MA2661.1 GLYMA-03G081700 Glycine max
 Basic leucine zipper factors (bZIP) bZIP
MA2662.1 GLYMA-13G153200 Glycine max
 Basic leucine zipper factors (bZIP) group A
MA2663.1 GLYMA-02G261700 Glycine max
 AP2/EREBP
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.