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70 profile(s) found

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ID Name Species Class Family Logo
MA2664.1 GLYMA-03G162700 Glycine max
 AP2/EREBP ERF/DREB
MA2665.1 GLYMA-11G053600 Glycine max
 AP2/EREBP ERF/DREB
MA2666.1 GLYMA-12G117000 Glycine max
 AP2/EREBP ERF/DREB
MA2667.1 GLYMA-13G236500 Glycine max
 AP2/EREBP ERF/DREB
MA2668.1 GLYMA-20G155100 Glycine max
 AP2/EREBP ERF/DREB
MA2669.1 GLYMA-04G231400 Glycine max
 Homeo domain factors HD-ZIP
MA2670.1 GLYMA-15G168800 Glycine max
 Homeo domain factors HD-ZIP
MA2671.1 GLYMA-19G100900 Glycine max
 B3 LAV
MA2672.1 GLYMA-01G233000 Glycine max
 Heat shock factors HSF
MA2673.1 GLYMA-15G086400 Glycine max
 Heat shock factors HSF
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.