Search profile(s)

2470 profile(s) found

Display profiles
ID Name Species Class Family Logo
MA0897.1 Hmx2 Mus musculus
Homeo domain factors NK
MA0898.1 Hmx3 Mus musculus
Homeo domain factors NK
MA0904.1 Hoxb5 Mus musculus
Homeo domain factors HOX
MA0910.1 Hoxd8 Mus musculus
Homeo domain factors HOX
MA0912.1 Hoxd3 Mus musculus
Homeo domain factors HOX
MA0921.3 CEH-48 Caenorhabditis elegans
Homeo domain factors HD-CUT
MA0925.1 sma-4 Caenorhabditis elegans
SMAD/NF-1 DNA-binding domain factors SMAD factors
MA0925.2 sma-4 Caenorhabditis elegans
SMAD/NF-1 DNA-binding domain factors SMAD factors
MA0930.1 ABF3 Arabidopsis thaliana
Basic leucine zipper factors (bZIP) Group A
MA0930.2 ABF3 Arabidopsis thaliana
Basic leucine zipper factors (bZIP) Group A
Showing 10 profiles of page 86 from 247 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.


You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)

Relative profile score threshold %

Cluster selected models using STAMP tool.




You can use the Newick tree from results to visualize on PhyloTree

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download the PFMs of the model(s) selected in four different formats.