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93 profile(s) found

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ID Name Species Class Family Logo
MA1875.2 GATA1/2/3 Ciona intestinalis
 Other C4 zinc finger-type factors C4-GATA-related
MA1970.1 TRPS1 Homo sapiens
 Other C4 zinc finger-type factors C4-GATA-related
MA1970.2 TRPS1 Homo sapiens
 Other C4 zinc finger-type factors C4-GATA-related
MA2133.1 elt-7 Caenorhabditis elegans
 Other C4 zinc finger-type factors C4-GATA-related
MA2134.1 end-3 Caenorhabditis elegans
 Other C4 zinc finger-type factors C4-GATA-related
MA2164.1 egl-27 Caenorhabditis elegans
 Other C4 zinc finger-type factors C4-GATA-related
MA2165.1 elt-1 Caenorhabditis elegans
 Other C4 zinc finger-type factors C4-GATA-related
MA2238.1 GATAe Drosophila melanogaster
 Other C4 zinc finger-type factors C4-GATA-related
MA2283.1 srp Drosophila melanogaster
 Other C4 zinc finger-type factors C4-GATA-related
MA2312.1 grn Drosophila melanogaster
 Other C4 zinc finger-type factors C4-GATA-related
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


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Download the PFMs of the model(s) selected in four different formats.