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236 profile(s) found

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ID Name Species Class Family Logo
MA0557.1 FHY3 Arabidopsis thaliana
 GCM domain factors FRS/FRF
MA0557.2 FHY3 Arabidopsis thaliana
 GCM domain factors FRS/FRF
MA0589.1 WRKY1 Arabidopsis thaliana
 GCM domain factors WRKY
MA0589.2 WRKY1 Arabidopsis thaliana
 GCM domain factors WRKY
MA0646.1 GCM1 Homo sapiens
 GCM domain factors GCM
MA0646.2 GCM1 Homo sapiens
 GCM domain factors GCM
MA0767.1 GCM2 Homo sapiens
 GCM domain factors GCM
MA0767.2 GCM2 Homo sapiens
 GCM domain factors GCM
MA0917.1 gcm2 Drosophila melanogaster
 GCM domain factors GCM
MA0935.1 NAC025 Arabidopsis thaliana
 GCM domain factors NAC
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.