Search profile(s)

  1. Home
  2. Search

24 profile(s) found

Display profiles
ID Name Species Class Family Logo
MA0038.1 Gfi1 Rattus norvegicus
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0038.2 GFI1 Homo sapiens
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0038.3 GFI1 Homo sapiens
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0160.1 NR4A2 Homo sapiens
Mus musculus
Rattus norvegicus
 Nuclear receptors with C4 zinc fingers NGFI-B-related receptors (NR4)
MA0160.2 NR4A2 Homo sapiens
 Nuclear receptors with C4 zinc fingers NGFI-B-related receptors (NR4)
MA0160.3 NR4A2 Homo sapiens
 Nuclear receptors with C4 zinc fingers NGFI-B-related receptors (NR4)
MA0162.1 Egr1 Mus musculus
 C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0162.2 EGR1 Homo sapiens
 C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0162.3 EGR1 Homo sapiens
 C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0162.4 EGR1 Homo sapiens
 C2H2 zinc finger factors Three-zinc finger Kruppel-related
Showing 10 profiles of page 1 from 3 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.