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12 profile(s) found

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ID Name Species Class Family Logo
MA0595.1 SREBF1 Homo sapiens
 Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0596.1 SREBF2 Homo sapiens
 Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0828.1 SREBF2 Homo sapiens
 Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0828.2 SREBF2 Homo sapiens
 Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0828.3 SREBF2 Homo sapiens
 Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0829.1 Srebf1 Mus musculus
 Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0829.2 SREBF1 Homo sapiens
 Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0829.3 SREBF1 Homo sapiens
 Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA1933.1 ELK1::SREBF2 Homo sapiens
 Tryptophan cluster factors::Basic helix-loop-helix factors (bHLH) Ets-related::bHLH-ZIP
MA1933.2 ELK1::SREBF2 Homo sapiens
 Tryptophan cluster factors::Basic helix-loop-helix factors (bHLH) Ets-related::bHLH-ZIP
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.