JASPAR CORE

  1. Home
  2. Collection core

Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0864.1 E2F2 Homo sapiens Fork head/winged helix factors E2F
MA0864.2 E2F2 Homo sapiens Fork head/winged helix factors E2F
MA0864.3 E2F2 Homo sapiens Fork head/winged helix factors E2F
MA0865.1 E2F8 Homo sapiens Fork head/winged helix factors E2F
MA0865.2 E2F8 Homo sapiens Fork head/winged helix factors E2F
MA0865.3 E2F8 Homo sapiens Fork head/winged helix factors E2F
MA0866.1 SOX21 Homo sapiens High-mobility group (HMG) domain factors SOX-related factors
MA0867.1 SOX4 Homo sapiens High-mobility group (HMG) domain factors SOX-related factors
MA0867.2 SOX4 Homo sapiens High-mobility group (HMG) domain factors SOX-related factors
MA0867.3 SOX4 Homo sapiens High-mobility group (HMG) domain factors SOX-related factors
MA0868.1 SOX8 Homo sapiens High-mobility group (HMG) domain factors SOX-related factors
MA0868.2 SOX8 Homo sapiens High-mobility group (HMG) domain factors SOX-related factors
MA0868.3 SOX8 Homo sapiens High-mobility group (HMG) domain factors SOX-related factors
MA0869.1 Sox11 Mus musculus High-mobility group (HMG) domain factors SOX-related factors
MA0869.2 Sox11 Mus musculus High-mobility group (HMG) domain factors SOX-related factors
MA0869.3 Sox11 Mus musculus High-mobility group (HMG) domain factors SOX-related factors
MA0870.1 Sox1 Mus musculus High-mobility group (HMG) domain factors SOX-related factors
MA0871.1 TFEC Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0871.2 TFEC Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0871.3 TFEC Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0872.1 TFAP2A Homo sapiens Basic helix-span-helix factors (bHSH) AP-2
MA0873.1 HOXD12 Homo sapiens Homeo domain factors HOX
MA0873.2 HOXD12 Homo sapiens Homeo domain factors HOX
MA0874.1 Arx Mus musculus Homeo domain factors Paired-related HD factors
MA0874.2 Arx Mus musculus Homeo domain factors Paired-related HD factors
MA0875.1 BARX1 Homo sapiens Homeo domain factors NK
MA0875.2 BARX1 Homo sapiens Homeo domain factors NK
MA0876.1 BSX Homo sapiens Homeo domain factors NK
MA0876.2 BSX Homo sapiens Homeo domain factors NK
MA0877.1 Barhl1 Mus musculus Homeo domain factors NK
MA0877.2 BARHL1 Homo sapiens Homeo domain factors NK
MA0877.3 BARHL1 Homo sapiens Homeo domain factors NK
MA0877.4 BARHL1 Homo sapiens Homeo domain factors NK
MA0878.1 CDX1 Homo sapiens Homeo domain factors HOX
MA0878.2 CDX1 Homo sapiens Homeo domain factors HOX
MA0878.3 CDX1 Homo sapiens Homeo domain factors HOX
MA0879.1 Dlx1 Mus musculus Homeo domain factors NK
MA0879.2 DLX1 Homo sapiens Homeo domain factors NK
MA0879.3 DLX1 Homo sapiens Homeo domain factors NK
MA0880.1 Dlx3 Mus musculus Homeo domain factors NK
MA0880.2 Dlx3 Mus musculus Homeo domain factors NK
MA0881.1 Dlx4 Mus musculus Homeo domain factors NK
MA0881.2 Dlx4 Mus musculus Homeo domain factors NK
MA0882.1 DLX6 Homo sapiens Homeo domain factors NK
MA0882.2 DLX6 Homo sapiens Homeo domain factors NK
MA0883.1 Dmbx1 Mus musculus Homeo domain factors Paired-related HD factors
MA0883.2 Dmbx1 Mus musculus Homeo domain factors Paired-related HD factors
MA0884.1 DUXA Homo sapiens Homeo domain factors Paired-related HD factors
MA0884.2 DUXA Homo sapiens Homeo domain factors Paired-related HD factors
MA0885.1 Dlx2 Mus musculus Homeo domain factors NK
Showing 50 profiles of page 35 from 86 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.