JASPAR CORE

Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0885.2 Dlx2 Mus musculus Homeo domain factors NK
MA0885.3 Dlx2 Mus musculus Homeo domain factors NK
MA0886.1 EMX2 Homo sapiens Homeo domain factors NK
MA0886.2 EMX2 Homo sapiens Homeo domain factors NK
MA0887.1 EVX1 Homo sapiens Homeo domain factors HOX
MA0887.2 EVX1 Homo sapiens Homeo domain factors HOX
MA0888.1 EVX2 Homo sapiens Homeo domain factors HOX
MA0888.2 EVX2 Homo sapiens Homeo domain factors HOX
MA0889.1 GBX1 Homo sapiens Homeo domain factors HOX
MA0889.2 GBX1 Homo sapiens Homeo domain factors HOX
MA0890.1 GBX2 Homo sapiens Homeo domain factors HOX
MA0890.2 GBX2 Homo sapiens Homeo domain factors HOX
MA0891.1 GSC2 Homo sapiens Homeo domain factors Paired-related HD factors
MA0891.2 GSC2 Homo sapiens Homeo domain factors Paired-related HD factors
MA0892.1 GSX1 Homo sapiens Homeo domain factors HOX
MA0892.2 GSX1 Homo sapiens Homeo domain factors HOX
MA0893.1 GSX2 Homo sapiens Homeo domain factors HOX
MA0893.2 GSX2 Homo sapiens Homeo domain factors HOX
MA0893.3 GSX2 Homo sapiens Homeo domain factors HOX
MA0894.1 HESX1 Homo sapiens Homeo domain factors Paired-related HD factors
MA0894.2 HESX1 Homo sapiens Homeo domain factors Paired-related HD factors
MA0895.1 HMBOX1 Homo sapiens Homeo domain factors POU domain factors
MA0895.2 HMBOX1 Homo sapiens Homeo domain factors POU domain factors
MA0896.1 Hmx1 Mus musculus Homeo domain factors NK
MA0896.2 Hmx1 Mus musculus Homeo domain factors NK
MA0897.1 Hmx2 Mus musculus Homeo domain factors NK
MA0897.2 Hmx2 Mus musculus Homeo domain factors NK
MA0898.1 Hmx3 Mus musculus Homeo domain factors NK
MA0898.2 Hmx3 Mus musculus Homeo domain factors NK
MA0899.1 HOXA10 Homo sapiens Homeo domain factors HOX
MA0899.2 HOXA10 Homo sapiens Homeo domain factors HOX
MA0900.1 HOXA2 Homo sapiens Homeo domain factors HOX
MA0900.2 HOXA2 Homo sapiens Homeo domain factors HOX
MA0900.3 HOXA2 Homo sapiens Homeo domain factors HOX
MA0901.1 HOXB13 Homo sapiens Homeo domain factors HOX
MA0901.2 HOXB13 Homo sapiens Homeo domain factors HOX
MA0901.3 HOXB13 Homo sapiens Homeo domain factors HOX
MA0902.1 HOXB2 Homo sapiens Homeo domain factors HOX
MA0902.2 HOXB2 Homo sapiens Homeo domain factors HOX
MA0902.3 HOXB2 Homo sapiens Homeo domain factors HOX
MA0903.1 HOXB3 Homo sapiens Homeo domain factors HOX
MA0903.2 HOXB3 Homo sapiens Homeo domain factors HOX
MA0904.1 Hoxb5 Mus musculus Homeo domain factors HOX
MA0904.2 HOXB5 Homo sapiens Homeo domain factors HOX
MA0904.3 HOXB5 Homo sapiens Homeo domain factors HOX
MA0905.1 HOXC10 Homo sapiens Homeo domain factors HOX
MA0905.2 HOXC10 Homo sapiens Homeo domain factors HOX
MA0906.1 HOXC12 Homo sapiens Homeo domain factors HOX
MA0906.2 HOXC12 Homo sapiens Homeo domain factors HOX
MA0907.1 HOXC13 Homo sapiens Homeo domain factors HOX
MA0907.2 HOXC13 Homo sapiens Homeo domain factors HOX
MA0908.1 HOXD11 Homo sapiens Homeo domain factors HOX
MA0908.2 HOXD11 Homo sapiens Homeo domain factors HOX
MA0909.1 HOXD13 Homo sapiens Homeo domain factors HOX
MA0909.2 HOXD13 Homo sapiens Homeo domain factors HOX
MA0909.3 Hoxd13 Mus musculus Homeo domain factors HOX
MA0909.4 Hoxd13 Mus musculus Homeo domain factors HOX
MA0910.1 Hoxd8 Mus musculus Homeo domain factors HOX
MA0910.2 HOXD8 Homo sapiens Homeo domain factors HOX
MA0910.3 HOXD8 Homo sapiens Homeo domain factors HOX
MA0911.1 Hoxa11 Mus musculus Homeo domain factors HOX
MA0911.2 Hoxa11 Mus musculus Homeo domain factors HOX
MA0912.1 Hoxd3 Mus musculus Homeo domain factors HOX
MA0912.2 HOXD3 Homo sapiens Homeo domain factors HOX
MA0913.1 Hoxd9 Mus musculus Homeo domain factors HOX
MA0913.2 HOXD9 Homo sapiens Homeo domain factors HOX
MA0913.3 HOXD9 Homo sapiens Homeo domain factors HOX
MA0914.1 ISL2 Homo sapiens Homeo domain factors HD-LIM
MA0914.2 ISL2 Homo sapiens Homeo domain factors HD-LIM
MA0915.1 dve Drosophila melanogaster Homeo domain factors HD-CUT
MA0915.2 dve Drosophila melanogaster Homeo domain factors HD-CUT
MA0916.1 Ets21C Drosophila melanogaster Tryptophan cluster factors Ets-related
MA0917.1 gcm2 Drosophila melanogaster GCM domain factors GCM
MA0918.1 unc-62 Caenorhabditis briggsae Homeo domain factors TALE-type homeo domain factors
MA0918.2 unc-62 Caenorhabditis briggsae Homeo domain factors TALE-type homeo domain factors
MA0919.1 dsc-1 Caenorhabditis briggsae Homeo domain factors Paired-related HD factors
MA0919.2 dsc-1 Caenorhabditis briggsae Homeo domain factors Paired-related HD factors
MA0920.1 fkh-2 Caenorhabditis briggsae Fork head/winged helix factors FOX
MA0920.2 fkh-2 Caenorhabditis briggsae Fork head/winged helix factors FOX
MA0921.1 ceh-48 Caenorhabditis elegans Homeo domain factors HD-CUT
MA0921.2 ceh-48 Caenorhabditis elegans Homeo domain factors HD-CUT
MA0922.1 ces-2 Caenorhabditis elegans Basic leucine zipper factors (bZIP) CEBP-related
MA0923.1 lim-4 Caenorhabditis elegans C2H2 zinc finger factors HD-LIM
MA0923.2 lim-4 Caenorhabditis elegans C2H2 zinc finger factors HD-LIM
MA0924.1 pal-1 Caenorhabditis elegans Homeo domain factors HOX
MA0925.1 sma-4 Caenorhabditis elegans SMAD/NF-1 DNA-binding domain factors SMAD factors
MA0925.2 sma-4 Caenorhabditis elegans SMAD/NF-1 DNA-binding domain factors SMAD factors
MA0926.1 unc-86 Caenorhabditis elegans Homeo domain factors POU domain factors
MA0927.1 vab-7 Caenorhabditis elegans Homeo domain factors HOX
MA0928.1 zfh-2 Caenorhabditis elegans Homeo domain factors HD-ZF factors
MA0928.2 zfh-2 Caenorhabditis elegans Homeo domain factors HD-ZF factors
MA0929.1 NCU00019 Neurospora crassa Fork head/winged helix factors FOX
MA0929.2 NCU00019 Neurospora crassa Fork head/winged helix factors FOX
MA0930.1 ABF3 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group A
MA0930.2 ABF3 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group A
MA0930.3 ABF3 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group A
MA0931.1 ABI5 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group A
MA0931.2 ABI5 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group A
MA0932.1 AHL12 Arabidopsis thaliana A.T hook factors AHL
MA0933.1 AHL20 Arabidopsis thaliana A.T hook factors AHL
MA0934.1 AHL25 Arabidopsis thaliana A.T hook factors AHL
MA0935.1 NAC025 Arabidopsis thaliana GCM domain factors NAC
MA0936.1 NAC046 Arabidopsis thaliana GCM domain factors NAC
MA0937.1 NAC055 Arabidopsis thaliana GCM domain factors NAC
MA0938.1 NAC058 Arabidopsis thaliana GCM domain factors NAC
MA0938.2 NAC058 Arabidopsis thaliana GCM domain factors NAC
MA0938.3 NAC058 Arabidopsis thaliana GCM domain factors NAC
MA0939.1 NAC079 Arabidopsis thaliana GCM domain factors NAC
MA0940.1 AP1 Arabidopsis thaliana MADS box factors MIKC
MA0941.1 ABF2 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group A
MA0941.2 ABF2 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group A
MA0942.1 ARF1 Arabidopsis thaliana B3 ARF
MA0942.2 ARF1 Arabidopsis thaliana B3 ARF
MA0943.1 ARF5 Arabidopsis thaliana B3 ARF
MA0943.2 ARF5 Arabidopsis thaliana B3 ARF
MA0944.1 ARF8 Arabidopsis thaliana B3 ARF
MA0944.2 ARF8 Arabidopsis thaliana B3 ARF
MA0945.1 ARR1 Arabidopsis thaliana Tryptophan cluster factors GARP_ARR-B
MA0945.2 ARR1 Arabidopsis thaliana Tryptophan cluster factors GARP_ARR-B
MA0946.1 ARR11 Arabidopsis thaliana Tryptophan cluster factors GARP_ARR-B
MA0947.1 ARR14 Arabidopsis thaliana Tryptophan cluster factors GARP_ARR-B
MA0948.1 ARR18 Arabidopsis thaliana Tryptophan cluster factors GARP_ARR-B
MA0948.2 ARR18 Arabidopsis thaliana Tryptophan cluster factors GARP_ARR-B
MA0949.1 ARR2 Arabidopsis thaliana Tryptophan cluster factors GARP_ARR-B
MA0949.2 ARR2 Arabidopsis thaliana Tryptophan cluster factors GARP_ARR-B
MA0950.1 ATHB-12 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0951.1 ATHB-16 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0952.1 ATHB-51 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0953.1 ATHB-6 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0953.2 ATHB-6 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0954.1 ATHB-7 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0954.2 ATHB-7 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0954.3 ATHB-7 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0955.1 POPTR_0002s00440g Populus trichocarpa C3H(C),C2HC zinc fingers factors SBP
MA0955.2 POPTR_0002s00440g Populus trichocarpa C3H(C),C2HC zinc fingers factors SBP
MA0956.1 BEE2 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA0956.2 BEE2 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA0957.1 BHLH3 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA0958.1 BHLH13 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA0959.1 AIB Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA0960.1 BHLH104 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA0961.1 BHLH112 Oryza sativa Japonica Group Basic helix-loop-helix factors (bHLH) bHLH
MA0961.2 bHLH112 Oryza sativa Japonica Group Basic helix-loop-helix factors (bHLH) bHLH
MA0962.1 BHLH34 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA0962.2 bHLH34 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA0963.1 bHLH78 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA0964.1 BIM1 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA0964.2 BIM1 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA0964.3 BIM1 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA0965.1 BIM2 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA0965.2 BIM2 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA0965.3 BIM2 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA0966.1 BIM3 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA0966.2 BIM3 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA0967.1 BZIP60 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group K
MA0968.1 BZIP68 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group G
MA0968.2 BZIP68 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group G
MA0968.3 BZIP68 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group G
MA0969.1 CAMTA2 Arabidopsis thaliana GCM domain factors CAMTA
MA0969.2 CAMTA2 Arabidopsis thaliana GCM domain factors CAMTA
MA0970.1 CAMTA3 Arabidopsis thaliana GCM domain factors CAMTA
MA0970.2 CAMTA3 Arabidopsis thaliana GCM domain factors CAMTA
MA0971.1 DREB1A Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0971.2 DREB1A Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0972.1 CCA1 Arabidopsis thaliana Tryptophan cluster factors Myb-related
MA0973.1 CDF2 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0973.2 CDF2 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0974.1 CDF3 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0974.2 CDF3 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0974.3 CDF3 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0975.1 CRF2 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0976.1 CRF4 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0976.2 CRF4 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0976.3 CRF4 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0977.1 DOF2.5 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0978.1 DREB1E Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0980.1 RAP2-10 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0980.2 RAP2-10 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0980.3 RAP2-10 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0981.1 DOF1.8 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0981.2 DOF1.8 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0982.1 DOF2.4 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0982.2 DOF2.4 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0983.1 DOF5.6 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0983.2 DOF5.6 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0984.1 DOF5.7 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0984.2 DOF5.7 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0986.1 DREB2C Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0987.1 PHYPADRAFT_140773 Physcomitrium patens Other C4 zinc finger-type factors DOF
MA0987.2 PHYPADRAFT_140773 Physcomitrium patens Other C4 zinc finger-type factors DOF
MA0988.1 PHYPADRAFT_143875 Physcomitrium patens Basic helix-loop-helix factors (bHLH)
MA0988.2 PHYPADRAFT_143875 Physcomitrium patens Basic helix-loop-helix factors (bHLH)
MA0989.1 PHYPADRAFT_153324 Physcomitrium patens Other C4 zinc finger-type factors DOF
MA0989.2 PHYPADRAFT_153324 Physcomitrium patens Other C4 zinc finger-type factors DOF
MA0990.1 HDG11 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0990.2 HDG11 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0992.1 ERF4 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0992.2 ERF4 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0992.3 ERF4 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0993.1 ERF7 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0993.2 ERF7 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0994.1 ERF8 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0994.2 ERF8 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0994.3 ERF8 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0995.1 ERF039 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0995.2 ERF039 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0995.3 ERF039 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0997.1 ERF069 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0997.2 ERF069 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0998.1 ERF096 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0998.2 ERF096 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1000.1 ERF105 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1000.2 ERF105 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1000.3 ERF105 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1001.1 ERF11 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1001.2 ERF11 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1001.3 ERF11 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1001.4 ERF076 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1004.1 ERF13 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1004.2 ERF13 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1005.1 ERF3 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1005.2 ERF3 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1005.3 ERF082 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1006.1 ERF6 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1006.2 ERF6 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1007.1 PHYPADRAFT_173530 Physcomitrium patens AP2/EREBP ERF/DREB
MA1008.1 PHYPADRAFT_182268 Physcomitrium patens AP2/EREBP ERF/DREB
MA1008.2 PHYPADRAFT_182268 Physcomitrium patens AP2/EREBP ERF/DREB
MA1009.1 ARF3 Arabidopsis thaliana B3 ARF
MA1010.1 PHYPADRAFT_64121 Physcomitrium patens AP2/EREBP ERF/DREB
MA1010.2 PHYPADRAFT_64121 Physcomitrium patens AP2/EREBP ERF/DREB
MA1011.1 PHYPADRAFT_72483 Physcomitrium patens Basic helix-loop-helix factors (bHLH)
MA1011.2 PHYPADRAFT_72483 Physcomitrium patens Basic helix-loop-helix factors (bHLH)
MA1012.1 AGL27 Arabidopsis thaliana MADS box factors MIKC
MA1013.1 GATA10 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1014.1 GATA11 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1015.1 GATA12 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1015.2 GATA12 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1016.1 GATA15 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1016.2 GATA15 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1017.1 GATA8 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1017.2 GATA8 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1018.1 GATA9 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1018.2 GATA9 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1019.1 Glyma19g26560.1 Glycine max TCP
MA1019.2 Glyma19g26560.1 Glycine max TCP
MA1020.1 GT-1 Arabidopsis thaliana Tryptophan cluster factors Trihelix
MA1021.1 PHYPADRAFT_48267 Physcomitrium patens Basic helix-loop-helix factors (bHLH)
MA1021.2 PHYPADRAFT_48267 Physcomitrium patens Basic helix-loop-helix factors (bHLH)
MA1022.1 PHYPADRAFT_38837 Physcomitrium patens Other C4 zinc finger-type factors DOF
Showing 250 profiles of page 8 from 18 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.


You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)

Relative profile score threshold %

Cluster selected models using STAMP tool.




You can use the Newick tree from results to visualize on PhyloTree

Create random matrix models based on selected models.


Create models with permuted columns from selected models.


Download the PFMs of the model(s) selected in four different formats.