JASPAR - LEC1-A - UN0422.1 - profile summary

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This profile is unvalidated. Please help our curators to validate profiles by performing experiments and/or by pointing to literature.

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Profile summary

Name:	LEC1-A
Matrix ID:	UN0422.1
Class:	Heteromeric CCAAT-binding factors
Family:	NF-YB
Collection:	UNVALIDATED
Taxon:	Plants
Species:	Glycine max
Data Type:	ChIP-seq
Validation:
Uniprot ID:	B5KMS8
Source:	28739919
Comment:	TF has several motif variants. The ab used for ChIP was done using recombinant protein containing regions shared by LEC1-A and LEC1-B. Therefore the profile could be for either or both LEC1-A and B.

Sequence logo

Frequency matrix

A [	3294	9508	942	609	452	567	892	1110	12833	4101	4425	]
C [	7023	1783	14394	207	435	401	820	14415	887	4154	3805	]
G [	2759	2775	501	15158	174	15073	12672	672	1497	3848	3775	]
T [	3467	2477	706	569	15482	502	2159	346	1326	4440	4538	]

Binding sites information

External links

Matrix ID	Base ID	Version	Name	Species	Family	Class
UN0422.1	UN0422	1	LEC1-A	Glycine max	NF-YB	Heteromeric CCAAT-binding factors
UN0423.1	UN0423	1	LEC1-A	Glycine max	NF-YB	Heteromeric CCAAT-binding factors
UN0424.1	UN0424	1	LEC1-A	Glycine max	NF-YB	Heteromeric CCAAT-binding factors
UN0422.2	UN0422	2	LEC1-A	Glycine max	NF-YB	Heteromeric CCAAT-binding factors
UN0423.2	UN0423	2	LEC1-A	Glycine max	NF-YB	Heteromeric CCAAT-binding factors
UN0424.2	UN0424	2	LEC1-A	Glycine max	NF-YB	Heteromeric CCAAT-binding factors