Detailed information of matrix profile UN0422.1

This profile is unvalidated. Please help our curators to validate profiles by performing experiments and/or by pointing to literature.

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Profile summary

Name: LEC1-A
Matrix ID: UN0422.1
Class: Heteromeric CCAAT-binding factors
Family: NF-YB
Collection: UNVALIDATED
Taxon: Plants
Species: Glycine max
Data Type: ChIP-seq
Validation:
Uniprot ID: B5KMS8  
Source: 28739919
Comment: TF has several motif variants. The ab used for ChIP was done using recombinant protein containing regions shared by LEC1-A and LEC1-B. Therefore the profile could be for either or both LEC1-A and B.

Sequence logo

Frequency matrix

A [ 3294 9508 942 609 452 567 892 1110 12833 4101 4425 ]
C [ 7023 1783 14394 207 435 401 820 14415 887 4154 3805 ]
G [ 2759 2775 501 15158 174 15073 12672 672 1497 3848 3775 ]
T [ 3467 2477 706 569 15482 502 2159 346 1326 4440 4538 ]

Binding sites information

External links