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11 profile(s) found

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ID Name Species Class Family Logo
MA0139.1 CTCF Homo sapiens
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0139.2 CTCF Homo sapiens
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0531.1 CTCF Drosophila melanogaster
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0531.2 CTCF Drosophila melanogaster
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1102.1 CTCFL Homo sapiens
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1102.2 CTCFL Homo sapiens
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1102.3 CTCFL Homo sapiens
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1929.1 CTCF Homo sapiens
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1929.2 CTCF Homo sapiens
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1930.1 CTCF Homo sapiens
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.