Search profile(s)

  1. Home
  2. Search

2470 profile(s) found

Display profiles
ID Name Species Class Family Logo
MA0099.1 Fos::Jun Mus musculus
 Basic leucine zipper factors (bZIP) Fos-related::Jun-related
MA0099.2 FOS::JUN Homo sapiens
Mus musculus
Rattus norvegicus
 Basic leucine zipper factors (bZIP) Fos-related::Jun-related
MA0099.3 FOS::JUN Homo sapiens
 Basic leucine zipper factors (bZIP) Fos-related::Jun-related
MA0099.4 FOS::JUN Homo sapiens
 Basic leucine zipper factors (bZIP) Fos-related::Jun-related
MA0102.3 CEBPA Homo sapiens
 Basic leucine zipper factors (bZIP) CEBP-related
MA0103.2 ZEB1 Homo sapiens
 Homeo domain factors HD-ZF factors
MA0103.3 ZEB1 Homo sapiens
 Homeo domain factors HD-ZF factors
MA0103.4 ZEB1 Homo sapiens
 Homeo domain factors HD-ZF factors
MA0104.3 Mycn Mus musculus
 Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0105.1 NFKB1 Homo sapiens
Oryctolagus cuniculus
Mus musculus
Rattus norvegicus
 Rel homology region (RHR) factors NF-kappaB-related factors
Showing 10 profiles of page 10 from 247 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.