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ID Name Species Class Family Logo
MA1415.1 REF6 Arabidopsis thaliana
 C2H2 zinc finger factors Jumonji
MA1415.2 REF6 Arabidopsis thaliana
 C2H2 zinc finger factors Jumonji
MA1424.1 ERF019 Arabidopsis thaliana
 AP2/EREBP ERF/DREB
MA1424.2 ERF019 Arabidopsis thaliana
 AP2/EREBP ERF/DREB
MA1425.1 HYH Arabidopsis thaliana
 Basic leucine zipper factors (bZIP) Group H
MA1425.2 HYH Arabidopsis thaliana
 Basic leucine zipper factors (bZIP) Group H
MA1427.1 NAC028 Arabidopsis thaliana
 GCM domain factors NAC
MA1427.2 NAC028 Arabidopsis thaliana
 GCM domain factors NAC
MA1427.3 NAC028 Arabidopsis thaliana
 GCM domain factors NAC
MA1428.1 TCP8 Arabidopsis thaliana
 TCP
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


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Download the PFMs of the model(s) selected in four different formats.