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138 profile(s) found

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ID Name Species Class Family Logo
MA0162.4 EGR1 Homo sapiens
 C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0162.5 EGR1 Homo sapiens
 C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0472.1 Egr2 Mus musculus
 C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0472.2 EGR2 Homo sapiens
 C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0475.1 FLI1 Homo sapiens
 Tryptophan cluster factors Ets-related
MA0475.2 FLI1 Homo sapiens
 Tryptophan cluster factors Ets-related
MA0475.3 FLI1 Homo sapiens
 Tryptophan cluster factors Ets-related
MA0498.1 Meis1 Mus musculus
 Homeo domain factors TALE-type homeo domain factors
MA0498.2 MEIS1 Homo sapiens
 Homeo domain factors TALE-type homeo domain factors
MA0498.3 MEIS1 Homo sapiens
 Homeo domain factors TALE-type homeo domain factors
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.