Search profile(s)

  1. Home
  2. Search

38 profile(s) found

Display profiles
ID Name Species Class Family Logo
MA0894.2 HESX1 Homo sapiens
 Homeo domain factors Paired-related HD factors
MA1099.1 Hes1 Mus musculus
 Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA1099.2 HES1 Homo sapiens
 Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA1099.3 HES1 Homo sapiens
 Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA1450.1 lin-54 Caenorhabditis elegans
 CRC domain
MA1456.1 Dref Drosophila melanogaster
 C2H2 zinc finger factors BED zinc finger factors
MA1456.2 Dref Drosophila melanogaster
 C2H2 zinc finger factors BED zinc finger factors
MA1457.1 grh Drosophila melanogaster
 Grainyhead domain factors Grainyhead-related factors
MA1457.2 grh Drosophila melanogaster
 Grainyhead domain factors Grainyhead-related factors
MA1458.1 Hsf Drosophila melanogaster
 Heat shock factors HSF factors
Showing 10 profiles of page 2 from 4 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.