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2470 profile(s) found

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ID Name Species Class Family Logo
MA0169.1 B-H2 Drosophila melanogaster
 Homeo domain factors HOX
MA0187.1 Dll Drosophila melanogaster
 Homeo domain factors NK
MA0205.1 Trl Drosophila melanogaster
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0205.2 Trl Drosophila melanogaster
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0205.3 Trl Drosophila melanogaster
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0208.1 al Drosophila melanogaster
 Homeo domain factors Paired-related HD factors
MA0209.1 ap Drosophila melanogaster
 Homeo domain factors HD-LIM
MA0210.1 ara Drosophila melanogaster
 Homeo domain factors TALE-type homeo domain factors
MA0220.1 en Drosophila melanogaster
 Homeo domain factors NK
MA0225.1 ftz Drosophila melanogaster
 Homeo domain factors HOX
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


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Download the PFMs of the model(s) selected in four different formats.