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93 profile(s) found

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ID Name Species Class Family Logo
MA0538.2 daf-12 Caenorhabditis elegans
 Other C4 zinc finger-type factors C4-GATA-related
MA0542.1 elt-3 Caenorhabditis elegans
 Other C4 zinc finger-type factors C4-GATA-related
MA0766.1 GATA5 Homo sapiens
 Other C4 zinc finger-type factors C4-GATA-related
MA0766.2 GATA5 Homo sapiens
 Other C4 zinc finger-type factors C4-GATA-related
MA0766.3 GATA5 Homo sapiens
 Other C4 zinc finger-type factors C4-GATA-related
MA1013.1 GATA10 Arabidopsis thaliana
 Other C4 zinc finger-type factors C4-GATA-related
MA1014.1 GATA11 Arabidopsis thaliana
 Other C4 zinc finger-type factors C4-GATA-related
MA1015.1 GATA12 Arabidopsis thaliana
 Other C4 zinc finger-type factors C4-GATA-related
MA1015.2 GATA12 Arabidopsis thaliana
 Other C4 zinc finger-type factors C4-GATA-related
MA1016.1 GATA15 Arabidopsis thaliana
 Other C4 zinc finger-type factors C4-GATA-related
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.