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138 profile(s) found

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ID Name Species Class Family Logo
MA1246.1 LEP Arabidopsis thaliana
 AP2/EREBP ERF/DREB
MA1246.2 LEP Arabidopsis thaliana
 AP2/EREBP ERF/DREB
MA1247.1 ERF087 Arabidopsis thaliana
 AP2/EREBP ERF/DREB
MA1247.2 ERF087 Arabidopsis thaliana
 AP2/EREBP ERF/DREB
MA1248.1 ERF012 Arabidopsis thaliana
 AP2/EREBP ERF/DREB
MA1248.2 ERF012 Arabidopsis thaliana
 AP2/EREBP ERF/DREB
MA1250.1 DREB2D Arabidopsis thaliana
 AP2/EREBP ERF/DREB
MA1250.2 DREB2D Arabidopsis thaliana
 AP2/EREBP ERF/DREB
MA1252.1 ERF086 Arabidopsis thaliana
 AP2/EREBP ERF/DREB
MA1252.2 ERF086 Arabidopsis thaliana
 AP2/EREBP ERF/DREB
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.