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19 profile(s) found

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ID Name Species Class Family Logo
MA0050.1 IRF1 Homo sapiens
 Tryptophan cluster factors Interferon-regulatory factors
MA0050.2 IRF1 Homo sapiens
 Tryptophan cluster factors Interferon-regulatory factors
MA0050.3 Irf1 Mus musculus
 Tryptophan cluster factors Interferon-regulatory factors
MA0050.4 Irf1 Mus musculus
 Tryptophan cluster factors Interferon-regulatory factors
MA0051.1 IRF2 Homo sapiens
 Tryptophan cluster factors Interferon-regulatory factors
MA0051.2 IRF2 Homo sapiens
 Tryptophan cluster factors Interferon-regulatory factors
MA0652.1 IRF8 Homo sapiens
 Tryptophan cluster factors Interferon-regulatory factors
MA0652.2 IRF8 Homo sapiens
 Tryptophan cluster factors Interferon-regulatory factors
MA0653.1 IRF9 Homo sapiens
 Tryptophan cluster factors Interferon-regulatory factors
MA0772.1 IRF7 Homo sapiens
 Tryptophan cluster factors Interferon-regulatory factors
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.