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11 profile(s) found

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ID Name Species Class Family Logo
MA0095.1 YY1 Homo sapiens
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0095.2 YY1 Homo sapiens
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0095.3 Yy1 Mus musculus
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0095.4 Yy1 Mus musculus
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0748.1 YY2 Homo sapiens
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0748.2 YY2 Homo sapiens
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0748.3 YY2 Homo sapiens
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1460.1 pho Drosophila melanogaster
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1460.2 pho Drosophila melanogaster
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1927.1 YY1-2 Ciona intestinalis
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.