JASPAR CORE

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Total 4279 profiles

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ID Name Species Class Family Sequence logo
MA0517.2 STAT1::STAT2 Homo sapiens STAT domain factors::STAT domain factors STAT factors::STAT factors
MA0518.1 Stat4 Mus musculus STAT domain factors STAT factors
MA0518.2 Stat4 Mus musculus STAT domain factors STAT factors
MA0519.1 Stat5a::Stat5b Mus musculus STAT domain factors::STAT domain factors STAT factors::STAT factors
MA0519.2 Stat5a::Stat5b Mus musculus STAT domain factors::STAT domain factors STAT factors::STAT factors
MA0520.1 Stat6 Mus musculus STAT domain factors STAT factors
MA0520.2 Stat6 Mus musculus STAT domain factors STAT factors
MA0521.1 Tcf12 Mus musculus Basic helix-loop-helix factors (bHLH) E2A
MA0521.2 Tcf12 Mus musculus Basic helix-loop-helix factors (bHLH) E2A
MA0521.3 Tcf12 Mus musculus Basic helix-loop-helix factors (bHLH) E2A
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.