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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1189.2 AT5G61620 Arabidopsis thaliana Tryptophan cluster factors MYB-related
MA1190.1 RVE5 Arabidopsis thaliana Tryptophan cluster factors MYB-related
MA1190.2 RVE5 Arabidopsis thaliana Tryptophan cluster factors MYB-related
MA1191.1 RVE7L Arabidopsis thaliana Tryptophan cluster factors MYB-related
MA1191.2 RVE7L Arabidopsis thaliana Tryptophan cluster factors MYB-related
MA1192.1 DIV1 Arabidopsis thaliana Tryptophan cluster factors MYB-related
MA1192.2 DIV1 Arabidopsis thaliana Tryptophan cluster factors MYB-related
MA1193.1 AT2G38090 Arabidopsis thaliana Tryptophan cluster factors MYB-related
MA1193.2 AT2G38090 Arabidopsis thaliana Tryptophan cluster factors MYB-related
MA1194.1 AT3G10580 Arabidopsis thaliana Tryptophan cluster factors MYB-related
MA1194.2 AT3G10580 Arabidopsis thaliana Tryptophan cluster factors MYB-related
MA1195.1 AT5G56840 Arabidopsis thaliana Tryptophan cluster factors MYB-related
MA1195.2 AT5G56840 Arabidopsis thaliana Tryptophan cluster factors MYB-related
MA1196.1 AT5G05790 Arabidopsis thaliana Tryptophan cluster factors MYB-related
MA1196.2 AT5G05790 Arabidopsis thaliana Tryptophan cluster factors MYB-related
MA1197.1 CAMTA1 Arabidopsis thaliana GCM domain factors CAMTA
MA1197.2 CAMTA1 Arabidopsis thaliana GCM domain factors CAMTA
MA1198.1 HAT2 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA1198.2 HAT2 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA1199.1 AGL16 Arabidopsis thaliana MADS box factors Type II
MA1203.1 AGL63 Arabidopsis thaliana MADS box factors Type II
MA1204.1 AGL13 Arabidopsis thaliana MADS box factors Type II
MA1205.1 AGL6 Arabidopsis thaliana MADS box factors Type II
MA1206.1 ARF2 Arabidopsis thaliana B3 ARF
MA1206.2 ARF2 Arabidopsis thaliana B3 ARF
Showing 25 profiles of page 94 from 183 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.